Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO55650.1RNA polymerase sigma-70 family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00140; Belongs to the sigma-70 factor family. ECF subfamily. (178 aa)    
Predicted Functional Partners:
AAO55869.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
 
 
 0.883
AAO54731.1
Regulatory protein, putative; See PMID:20190049 for expression data.
 
 
 0.842
AAO54735.1
Regulatory protein, putative; See PMID:20190049 for expression data.
 
 
 0.842
AAO53989.1
Regulatory protein, putative.
 
 
 0.834
AAO54809.1
Regulatory protein, putative.
 
 
 0.833
pvsA
Pyoverdine chromophore precursor synthetase; This synthetase is the first component (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore. This module initiates the chain and synthesizes the tripeptide L-glutamate:D-tyrosine:L-2-diaminobutyrate which is the constant feature of all pyoverdines and is subsequently converted to the fluorescent chromophore; see PMID:20190049 for expression data; similar to GP:440169; identified by sequence similarity; putative.
 
  
 0.808
mucA
Sigma factor algU negative regulatory protein MucA; See PMID:20190049 for expression data; similar to SP:P38107; identified by sequence similarity; putative.
  
 
 0.792
AAO54807.1
Heme oxygenase, putative; See PMID:20190049 for expression data.
  
  
 0.735
pvdE
Pyoverdine ABC transporter, ATP-binding/permease protein; See PMID:20190049 for expression data; similar to GP:466460, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; putative.
  
  
 0.727
AAO55672.1
Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative.
   
  
 0.720
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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