Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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AAO55672.1Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. (427 aa)    
Predicted Functional Partners:
AAO55673.1
Renal dipeptidase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02776.
 
  
 0.991
AAO55671.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781.
  
  
 0.966
pvdE
Pyoverdine ABC transporter, ATP-binding/permease protein; See PMID:20190049 for expression data; similar to GP:466460, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; putative.
  
  
 0.942
pvdQ
Penicillin amidase family protein; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length) (By similarity).
  
  
 0.933
daT
2,4-diaminobutyrate 4-transaminase; Catalyzes the conversion of aspartate semialdehyde (an intermediate in the biosynthesis of various amino acids) to 2,4-diaminobutyrate (DAB). It is unclear whether the partner for this converison is alanine or glutamate. DAB is required for the biosynthesis of the pyoverdine chromophore, and this gene is located whithin the pyoverdine gene cluster; similar to SP:P56744; identified by sequence similarity; putative; see PMID:20190049 for expression data; Catalyzes the conversion of aspartate semialdehyde (an intermediate in the biosynthesis of various [...]
  
  
 0.924
iscU
Iron-binding protein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.922
pvsA
Pyoverdine chromophore precursor synthetase; This synthetase is the first component (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore. This module initiates the chain and synthesizes the tripeptide L-glutamate:D-tyrosine:L-2-diaminobutyrate which is the constant feature of all pyoverdines and is subsequently converted to the fluorescent chromophore; see PMID:20190049 for expression data; similar to GP:440169; identified by sequence similarity; putative.
   
  
 0.876
pvdP
Tat (twin-arginine translocation) pathway signal sequence domain protein; PvdP; similar to SP:Q9I188; identified by sequence similarity; putative; PvdP; see PMID:20190049 for expression data; similar to SP:Q9I188; identified by sequence similarity; putative.
  
  
 0.848
AAO58947.1
N-acetylmuramoyl-L-alanine amidase, family 3; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01520.
     
 0.808
AAO56772.1
TonB-dependent siderophore receptor, putative; See PMID:20190049 for expression data; similar to GP:2981048, and SP:P00089; identified by sequence similarity; putative.
      
 0.806
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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