Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AAO55675.1Outer membrane efflux protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02321. (467 aa)    
Predicted Functional Partners:
macB1
Macrolide ABC efflux protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.993
AAO55677.1
Efflux transporter, RND family, MFP subunit; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.964
saxB-2
Isothiocyanate resistance protein SaxB; See PMID:21385714; see PMID:20190049 for expression data.
 0.961
AAO57754.1
Efflux transporter, RND family, MFP subunit; See PMID:20190049 for expression data; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.959
syfC
Syringafactin efflux protein SyfC; See PMID:17601782; see PMID:20190049 for expression data; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.829
AAO55671.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781.
   
  
 0.818
saxF
Aliphatic isothiocyanate resistance protein SaxF; See PMID:21385714.
 
 0.815
AAO56097.1
Multidrug resistance protein, AcrA/AcrE family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.806
AAO56419.1
Multidrug transporter, putative; Similar to GP:5924064, and GB:X78559; identified by sequence similarity; putative.
  
 
 0.805
mexE
Multidrug efflux RND membrane fusion protein MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.803
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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