Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO55698.1Transcriptional regulator, IclR family; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01614. (269 aa)    
Predicted Functional Partners:
AAO58802.1
Allophanate hydrolase, putative; Similar to GP:2290992; identified by sequence similarity; putative.
  
    0.840
eda-2
4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate; Similar to SP:P50846; identified by sequence similarity; putative.
 
   
 0.805
dgoK
2-dehydro-3-deoxygalactonate kinase; See PMID:20190049 for expression data; similar to SP:P31459; identified by sequence similarity; putative.
 
   
 0.730
AAO56280.1
Transcriptional regulator, IclR family; See PMID:20190049 for expression data; similar to GP:11275975; identified by sequence similarity; putative.
  
     0.712
AAO55697.1
MFS transporter, phthalate permease family; Similar to SP:P31457; identified by sequence similarity; putative.
 
  
 0.696
AAO57027.1
Transcriptional regulator, IclR family.
  
     0.694
AAO55696.1
Mandelate racemase/muconate lactonizing enzyme family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02746.
 
   
 0.652
AAO58670.1
Transcriptional regulator, GntR family; Similar to GP:15140812; identified by sequence similarity; putative.
  
  
 0.537
AAO57242.1
Transcriptional regulator, GntR family; See PMID:20190049 for expression data; similar to GP:6468429; identified by sequence similarity; putative.
  
  
 0.455
AAO56733.1
Transcriptional regulator, GntR family; See PMID:20190049 for expression data; similar to GP:15140812; identified by sequence similarity; putative.
  
  
 0.415
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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