Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO55699.1Oxidoreductase, zinc-binding protein; Identified by match to PFAM protein family HMM PF02826. (350 aa)    
Predicted Functional Partners:
adhB
Alcohol dehydrogenase II; See PMID:20190049 for expression data; similar to SP:P06758; identified by sequence similarity; putative.
  
 0.945
adhC
Alcohol dehydrogenase, class III; See PMID:20190049 for expression data.
  
 
0.936
AAO54270.1
Aldehyde dehydrogenase family protein; See PMID:20190049 for expression data; Belongs to the aldehyde dehydrogenase family.
  
 0.913
AAO55399.1
Aldehyde dehydrogenase family protein; Similar to GP:13309884; identified by sequence similarity; putative; Belongs to the aldehyde dehydrogenase family.
  
 0.911
AAO57114.1
Identified by match to TIGR protein family HMM TIGR01804.
  
 0.911
AAO55913.1
Glycerol kinase, putative; Identified by match to PFAM protein family HMM PF02782; Belongs to the FGGY kinase family.
    
 0.906
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.906
AAO56199.1
Oxidoreductase, zinc-binding protein; See PMID:20190049 for expression data; similar to SP:P31975; identified by sequence similarity; putative.
  
  
 
0.902
AAO55700.1
Transcriptional regulator, AraC family; See PMID:20190049 for expression data; similar to GB:M59828, GB:M24744, SP:P08107, PID:188488, PID:188490, PID:188528, PID:188530, PID:32483, PID:386785, PID:639910, GB:M59830, SP:P08107, PID:188488, PID:188490, PID:188528, PID:188530, PID:32483, PID:386785, and PID:639910; identified by sequence similarity; putative.
  
    0.612
rluE
Ribosomal large subunit pseudouridine synthase E; Identified by similarity to SP:P75966; match to protein family HMM PF00849; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
       0.532
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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