Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
etfB-2Electron transfer flavoprotein, beta subunit; Similar to GP:15075667, SP:P38975, and SP:P38975; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:15075667, SP:P38975, and SP:P38975, identified by sequence similarity, putative. (249 aa)    
Predicted Functional Partners:
etfA-2
Electron transfer flavoprotein, alpha subunit; Similar to GP:15159729, and SP:P38974; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:15159729, and SP:P38974, identified by sequence similarity, putative.
 0.999
etfA-1
Electron transfer flavoprotein, alpha subunit.
 
 0.994
fadH
2,4-dienoyl-CoA reductase; Similar to GP:9716173, and SP:P42593; identified by sequence similarity; putative.
  
 
 0.858
AAO56240.1
acyl-CoA dehydrogenase, putative; Similar to GP:15140585, and SP:P45857; identified by sequence similarity; putative.
 
 
 0.805
fadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 
 0.801
acdA
acyl-CoA dehydrogenase; See PMID:20190049 for expression data.
 
 
 0.797
AAO58881.1
acyl-CoA dehydrogenase, putative; See PMID:20190049 for expression data; similar to GP:15140733, and SP:P45857; identified by sequence similarity; putative.
 
 
 0.754
AAO55704.1
Lipoprotein, putative; See PMID:20190049 for expression data.
       0.740
cfa6
Coronafacic acid polyketide synthase I; This gene is the first of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPC (2-carboxy-2-cyclopentenone) from an acyl carrier protein (cfa1), it then adds a buyrate group and then completely reduces the ketone of the (former) carboxylate group. The resulting product is then passed to the second polyketide synthetase (cfa7); similar to GP:13346874; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the first of two multi [...]
  
 
 0.736
AAO58531.1
Conserved hypothetical protein; Similar to GP:15055554, and GP:17430823; identified by sequence similarity; putative.
  
 
 0.723
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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