Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AAO55705.1ompA family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00691. (271 aa)    
Predicted Functional Partners:
AAO55703.1
Conserved hypothetical protein; Similar to GP:5257108; identified by sequence similarity; putative.
   
   0.874
AAO55704.1
Lipoprotein, putative; See PMID:20190049 for expression data.
       0.828
AAO55027.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
 
 
 0.661
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.598
cpoB
Conserved protein of unknown function; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.518
AAO54808.1
TonB-dependent outer membrane heme receptor; See PMID:20190049 for expression data.
      
 0.501
AAO55063.1
Outer membrane protein OmpH, putative; See PMID:20190049 for expression data.
 
 
 0.498
etfB-2
Electron transfer flavoprotein, beta subunit; Similar to GP:15075667, SP:P38975, and SP:P38975; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:15075667, SP:P38975, and SP:P38975, identified by sequence similarity, putative.
       0.498
etfA-2
Electron transfer flavoprotein, alpha subunit; Similar to GP:15159729, and SP:P38974; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:15159729, and SP:P38974, identified by sequence similarity, putative.
       0.498
AAO57584.1
TonB-dependent siderophore receptor; Similar to GP:2981048; identified by sequence similarity; putative.
      
 0.498
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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