STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
papDChaperone protein PapD. (251 aa)    
Predicted Functional Partners:
fimD
Outer membrane usher protein fimD.
 
 
 0.986
AAO55743.1
Fimbrial protein, putative.
 
 
 0.975
fimA
Type I pilus biogensis protein FimA.
 
 
 0.954
AAO58871.1
Conserved protein of unknown function; Similar to GP:15980258, and GP:15980258; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:15980258, and GP:15980258, identified by sequence similarity, putative.
  
     0.648
AAO55529.1
Autotransporter, putative; Similar to GP:5305639; identified by sequence similarity; putative.
  
    0.631
AAO56269.1
Lipoprotein, putative; See PMID:20190049 for expression data.
  
     0.611
AAO53925.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:606038; identified by sequence similarity; putative.
  
     0.588
AAO55741.1
Autotransporter, putative; Similar to GP:5305639, and GP:5305639; identified by sequence similarity; putative.
  
    0.585
AAO53710.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15978663; identified by sequence similarity; putative.
  
     0.559
AAO58083.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.559
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.