Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO55763.1Lipoprotein, putative; See PMID:20190049 for expression data. (92 aa)    
Predicted Functional Partners:
AAO55764.1
moxR protein, putative; See PMID:20190049 for expression data; similar to GB:J03544, SP:P11216, and PID:307200; identified by sequence similarity; putative.
       0.703
AAO55765.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to SP:P11430, SP:P16529, GB:S51490, GB:D00217, and PID:262707; identified by sequence similarity; putative.
       0.703
AAO55766.1
Transglutaminase-like domain protein; Similar to SP:P11430, SP:P16529, GB:S51490, GB:D00217, and PID:262707; identified by sequence similarity; putative.
       0.656
AAO55821.1
Conserved hypothetical protein.
      
 0.636
kdpE
KDP operon transcriptional regulatory protein kdpE; See PMID:20190049 for expression data.
       0.538
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.533
selU
Conserved hypothetical protein; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
       0.533
kdpD
Sensor protein KdpD; See PMID:20190049 for expression data.
       0.523
AAO55767.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
       0.430
kdpC
Potassium-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.
       0.408
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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