Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO55811.1Membrane protein, putative; See PMID:20190049 for expression data. (274 aa)    
Predicted Functional Partners:
crfX
crfX protein; See PMID:20190049 for expression data.
  
  
 0.970
AAO55812.1
RNA polymerase sigma factor-70 sigW, putative; See PMID:20190049 for expression data; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.942
AAO55808.1
Dimethylmenaquinone methyltransferase family protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).
     
 0.802
oprF
Outer membrane porin OprF; See PMID:20190049 for expression data.
 
   
 0.747
AAO55807.1
Esterase/lipase/thioesterase family protein; See PMID:20190049 for expression data.
     
 0.709
AAO58417.1
Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF02585.
  
     0.691
cmaX
cmaX protein; See PMID:20190049 for expression data.
  
  
 0.689
AAO57353.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.652
AAO58744.1
Outer membrane porin, OprD family; Identified by match to PFAM protein family HMM PF03573; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03573.
  
     0.651
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
       0.637
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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