Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO55812.1RNA polymerase sigma factor-70 sigW, putative; See PMID:20190049 for expression data; Belongs to the sigma-70 factor family. ECF subfamily. (165 aa)    
Predicted Functional Partners:
AAO55811.1
Membrane protein, putative; See PMID:20190049 for expression data.
 
  
 0.942
mucA
Sigma factor algU negative regulatory protein MucA; See PMID:20190049 for expression data; similar to SP:P38107; identified by sequence similarity; putative.
 
 
 0.829
oprF
Outer membrane porin OprF; See PMID:20190049 for expression data.
 
   
 0.801
crfX
crfX protein; See PMID:20190049 for expression data.
  
  
 0.769
hrpL
RNA polymerase sigma factor HrpL; See PMID:20190049 for expression data; similar to GP:5360281, and SP:P37929; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.748
AAO55808.1
Dimethylmenaquinone methyltransferase family protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).
     
 0.684
AAO54574.1
RNA polymerase sigma factor sigW, putative; Similar to SP:Q45585; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.662
AAO58602.1
RNA polymerase sigma-70 family protein; See PMID:20190049 for expression data; similar to GP:5531433; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.642
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
     
 0.621
AAO55805.1
Conserved protein of unknown function; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation/dephosphorylation.
       0.555
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.