Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO55946.1ISPsy5, transposase; Identified by match to PFAM protein family HMM PF03050. (517 aa)    
Predicted Functional Partners:
AAO55945.1
ISPsy5, Orf1; The gene assignment is based on its position in a multicopy insertion sequence, directly adjacent to an ORF matching an HMM for the IS66 family; similar to GP:8037784; identified by sequence similarity; putative.
       0.723
AAO55947.1
Amine oxidase, flavin-containing protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01494.
       0.596
AAO55948.1
acyl-CoA dehydrogenase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02770.
       0.471
AAO55949.1
acyl-CoA dehydrogenase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02771.
       0.423
AAO55944.1
Oxidoreductase, FAD-binding, putative; Identified by match to TIGR protein family HMM TIGR01679.
       0.406
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (14%) [HD]