Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
soxB-2Sarcosine oxidase, beta subunit; Similar to SP:P40875; identified by sequence similarity; putative. (413 aa)    
Predicted Functional Partners:
soxA-2
Sarcosine oxidase, alpha subunit; Similar to SP:Q46337; identified by sequence similarity; putative; Belongs to the GcvT family.
 
 0.997
soxD-1
Sarcosine oxidase, delta subunit; Similar to SP:Q46336, GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; putative.
 
 0.996
soxD-2
Sarcosine oxidase, delta subunit; Similar to GP:13241963, and SP:Q46336; identified by sequence similarity; putative.
 
 0.996
soxG-1
Sarcosine oxidase, gamma subunit; Similar to SP:Q46338, GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; putative.
 
 0.995
soxA-1
Sarcosine oxidase, alpha subunit; Similar to SP:Q46337; identified by sequence similarity; putative; Belongs to the GcvT family.
 
 0.995
soxG-2
Sarcosine oxidase, gamma subunit; Similar to SP:Q46338; identified by sequence similarity; putative.
 
 0.995
AAO53940.1
NADH:flavin oxidoreductase/NADH oxidase family protein.
 
 0.936
AAO53954.1
Threonine aldolase, low-specificity; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.
    
  0.908
soxB-1
Sarcosine oxidase, beta subunit; Similar to GP:14023472, and SP:P40875; identified by sequence similarity; putative.
  
  
 
0.907
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.907
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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