Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AAO56080.1Peptide ABC transporter, permease protein. (305 aa)    
Predicted Functional Partners:
AAO56079.1
Peptide ABC transporter, permease protein.
 0.998
AAO56077.1
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.997
AAO56078.1
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.996
AAO56081.1
Peptide ABC transporter, periplasmic peptide-binding protein.
 
 0.993
AAO57985.1
Peptide ABC transporter, permease protein.
 
 0.896
AAO56729.1
Dipeptide ABC transporter, permease protein DppC, putative.
 
 0.894
AAO56311.1
Peptide ABC transporter, permease protein.
 
 
 0.893
AAO56579.1
Nickel ABC transporter, permease protein, putative.
 
 
 0.893
AAO53797.1
Peptide ABC transporter, permease protein.
 
 
 0.892
dppC
Dipeptide ABC transporter, permease protein.
 
 
 0.890
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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