STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56237.1Biotin carboxylase/biotin-containing subunit; Similar to GP:15159866; identified by sequence similarity; putative. (649 aa)    
Predicted Functional Partners:
AAO56239.1
Carboxyl transferase domain protein; Similar to GP:15159867; identified by sequence similarity; putative.
 0.999
AAO56238.1
Identified by match to PFAM protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.993
AAO56240.1
acyl-CoA dehydrogenase, putative; Similar to GP:15140585, and SP:P45857; identified by sequence similarity; putative.
 
 0.991
oadA
Oxaloacetate decarboxylase, alpha subunit; See PMID:20190049 for expression data.
 
 
0.965
fadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 0.943
AAO56648.1
enoyl-CoA hydratase/isomerase family protein; See PMID:20190049 for expression data; similar to SP:Q52995; identified by sequence similarity; putative; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.932
AAO56246.1
acyl-CoA dehydrogenase family protein; See PMID:20190049 for expression data.
  
 0.915
AAO56427.1
Urea amidolyase-related protein.
 
 
 0.897
accA
acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
 
 0.894
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 0.881
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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