Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
proPProline/betaine transporter; Similar to GP:8250606, and SP:P30848; identified by sequence similarity; putative. (438 aa)    
Predicted Functional Partners:
AAO56301.1
Prolidase, putative; Similar to GP:4887599, and SP:P00085; identified by sequence similarity; putative.
       0.778
AAO56303.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
       0.450
betT
Choline transporter; See PMID: 18156257; see PMID:20190049 for expression data; Belongs to the BCCT transporter (TC 2.A.15) family.
      
 0.446
AAO56304.1
Transcriptional regulator, LysR family; Similar to GP:15158811; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.414
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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