STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56312.1Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
AAO56311.1
Peptide ABC transporter, permease protein.
 
 0.998
AAO56310.1
Peptide ABC transporter, permease protein.
 
 0.996
AAO56313.1
Peptide ABC transporter, periplasmic peptide-binding protein; Similar to GP:15140494, and SP:P23847; identified by sequence similarity; putative.
 
 
 0.978
AAO57985.1
Peptide ABC transporter, permease protein.
  
 0.938
AAO56729.1
Dipeptide ABC transporter, permease protein DppC, putative.
  
 0.933
AAO56579.1
Nickel ABC transporter, permease protein, putative.
  
 0.914
AAO56079.1
Peptide ABC transporter, permease protein.
  
 0.905
dppC
Dipeptide ABC transporter, permease protein.
  
 0.887
AAO56080.1
Peptide ABC transporter, permease protein.
 
 
 0.862
AAO57986.1
Peptide ABC transporter, permease protein.
 
 
 0.861
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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