STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56367.1Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer. (1044 aa)    
Predicted Functional Partners:
AAO56366.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
 0.972
AAO56368.1
HopL1 protein; Previously known as HopPtoL (PMID12032338); not a type III effector; see PMID:20190049 for expression data.
 
  
 0.963
AAO56369.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:12722244; identified by sequence similarity; putative.
 
   
 0.951
AAO56370.1
ppkA-related protein; See PMID:20190049 for expression data; similar to GP:5787973; identified by sequence similarity; putative.
 
     0.933
AAO56372.1
ABC transporter, permease protein, putative; Identified by match to PFAM protein family HMM PF03073.
 
     0.932
AAO56373.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781.
 
     0.915
AAO56376.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.866
AAO56371.1
ABC transporter, ATP-binding protein; See PMID:20190049 for expression data; similar to GP:12722247, and GP:18643164; identified by sequence similarity; putative.
 
     0.863
AAO56374.1
Lipoprotein, putative; See PMID:20190049 for expression data.
       0.574
AAO56375.1
Lipoprotein, putative; See PMID:20190049 for expression data; similar to GP:15193244; identified by sequence similarity; putative.
       0.574
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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