STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylFD-xylose ABC transporter, periplasmic-D xylose binding protein. (333 aa)    
Predicted Functional Partners:
xylG
D-xylose ABC transporter, ATP-binding protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 
 0.988
xylH
D-xylose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.988
xylA
Xylose isomerase; Similar to GP:43314; identified by sequence similarity; putative; Belongs to the xylose isomerase family.
 
  
 0.837
xylR
Xylose operon regluatory protein; Similar to SP:P37390, GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, PID:747710, GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, and PID:747710; identified by sequence similarity; putative.
 
   
 0.785
araH
L-arabinose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
 0.720
rbsC-1
Ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
 0.704
AAO56485.1
Ribose ABC transporter, permease protein, putative; Similar to GP:15140938, and SP:P37772; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.679
rbsC-2
Ribose ABC transporter, permease protein; Similar to GP:6714794, and SP:P36948; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
   
 0.664
AAO56486.1
Ribose ABC transporter, permease protein, putative; Similar to SP:P04984; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.650
AAO56963.1
Sugar ABC transporter, permease protein; Similar to GP:15141309, and SP:P36948; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
   
 0.619
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.