STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56638.1Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer. (61 aa)    
Predicted Functional Partners:
AAO56639.1
Membrane protein, putative; See PMID:20190049 for expression data.
 
    0.954
AAO58985.1
Transposition protein, TnsD-related protein; This gene assignment is based in part on a multiple alignment; similar to GP:2653997, and SP:P13991; identified by sequence similarity; putative.
  
     0.550
AAO58878.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:773184, and GP:773184; identified by sequence similarity; putative.
  
     0.467
AAO58183.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.448
AAO58181.1
UvrD/REP helicase family protein; See PMID:20190049 for expression data; similar to SP:P56255; identified by sequence similarity; putative.
  
     0.425
AAO55607.1
Host specificity protein J, internal deletion; Similar to SP:P03749; identified by sequence similarity; putative.
  
     0.418
AAO57498.1
Host specificity protein J, internal deletion; Identified by match to PFAM protein family HMM PF03280.
  
     0.414
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.