STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56689.1Transcriptional regulator, LysR family; Similar to GP:15159148; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
AAO57727.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.745
AAO56252.1
Transcriptional regulator, LysR family; See PMID:20190049 for expression data; similar to GP:15158871; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.727
AAO56360.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
     0.721
AAO56666.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF02954; Belongs to the LysR transcriptional regulatory family.
  
     0.719
AAO55401.1
Transcriptional regulator, LysR family; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.625
AAO53670.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF02954; Belongs to the LysR transcriptional regulatory family.
  
     0.617
AAO53718.1
Transcriptional regulator, LysR family; Similar to GP:15158554; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.537
AAO56550.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.523
AAO57147.1
Transcriptional regulator, LysR family; Similar to GP:15073695; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.513
AAO56690.1
ISPssy, transposase; Similar to GP:4514540; identified by sequence similarity; putative.
       0.511
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.