Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AAO56722.1GGDEF domain protein; Identified by match to TIGR protein family HMM TIGR00254. (304 aa)    
Predicted Functional Partners:
AAO56723.1
Transcriptional regulator, AraC family; Identified by match to PFAM protein family HMM PF00165.
 
     0.945
AAO55004.1
Response regulator/EAL domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00072.
 
  
 0.836
AAO57991.1
GAF domain/GGDEF domain/EAL domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00990.
 
  
 0.818
AAO57664.1
HAMP domain/GGDEF domain/EAL domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00672.
  
    0.816
AAO53782.1
EAL domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00563.
  
    0.797
AAO53668.1
GGDEF domain/EAL domain protein; Similar to GP:9951610; identified by sequence similarity; putative.
  
   0.789
AAO56400.1
GGDEF domain/EAL domain protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00254.
  
   0.789
AAO57815.1
GGDEF domain/EAL domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00672.
  
   0.786
AAO54537.1
GGDEF domain protein; Similar to GB:L03357, SP:P07949, SP:P10644, PID:1658306, PID:337358, and PID:490118; identified by sequence similarity; putative.
  
    0.782
AAO58214.1
GGDEF domain protein; Similar to GP:15156086; identified by sequence similarity; putative.
  
     0.774
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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