Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO56880.1Hypothetical protein; Similar to SP:Q98917; identified by sequence similarity; putative. (92 aa)    
Predicted Functional Partners:
AAO56878.1
Baseplate assembly protein J; Similar to GP:4063791, and SP:P51767; identified by sequence similarity; putative.
       0.859
AAO56879.1
Baseplate assembly protein W; Similar to GP:6723254; identified by sequence similarity; putative.
       0.859
AAO56877.1
Tail protein I; Similar to GP:17428940; identified by sequence similarity; putative.
       0.828
AAO56876.1
Tail fiber protein H, putative; Similar to GP:17428939; identified by sequence similarity; putative.
       0.790
AAO56875.1
Tail fiber assembly domain protein; Identified by match to PFAM protein family HMM PF02413.
       0.778
AAO56881.1
Baseplate assembly protein V; Similar to SP:P31340; identified by sequence similarity; putative.
       0.701
AAO56882.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.701
AAO56883.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.701
AAO56884.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.698
AAO56885.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.660
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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