Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO56896.1DNA primase domain protein; Identified by match to PFAM protein family HMM PF01751. (739 aa)    
Predicted Functional Partners:
AAO56898.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.884
AAO56897.1
C4-type zinc finger protein, DksA/TraR family; Similar to GP:4063813; identified by sequence similarity; putative.
       0.820
AAO56895.1
Conserved hypothetical protein; Similar to GP:5725151, and GP:5725184; identified by sequence similarity; putative.
       0.813
AAO56890.1
Terminase, large subunit; Similar to SP:P03708; identified by sequence similarity; putative.
 
   
 0.732
AAO56888.1
Portal protein; Identified by match to PFAM protein family HMM PF05136.
 
   
 0.716
AAO56885.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.703
AAO56886.1
Conserved hypothetical protein; Similar to GP:17427871; identified by sequence similarity; putative.
 
   
 0.685
AAO56871.1
Tail tape measure protein; Identified by match to TIGR protein family HMM TIGR01760.
  
   
 0.681
AAO56870.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.675
AAO56881.1
Baseplate assembly protein V; Similar to SP:P31340; identified by sequence similarity; putative.
  
     0.629
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.