Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO56916.1Glycosyl transferase, group 2 family protein; Similar to SP:P23863, PID:42839, GB:U00096, PID:1651431, PID:1651438, and PID:1787139; identified by sequence similarity; putative. (311 aa)    
Predicted Functional Partners:
AAO56914.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Similar to GP:13183735; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.935
AAO56915.1
Polysaccharide biosynthesis protein, putative; Identified by match to PFAM protein family HMM PF03023.
  
  
 0.886
AAO56918.1
Tyrosine-protein kinase; Similar to GP:4512007, and SP:P38134; identified by sequence similarity; putative.
  
  
 0.846
AAO56917.1
Low molecular weight phosphotyrosine protein phosphatase family protein; Similar to SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; putative; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.840
rfaH
Transcriptional activator RfaH; Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. Belongs to the RfaH family.
       0.765
AAO55438.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00858; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.666
AAO56924.1
Capsular polysaccharide biosynthesis protein; Similar to SP:Q48460; identified by sequence similarity; putative.
 
  
 0.660
AAO57373.1
Conserved hypothetical protein; Similar to SP:P71786, and SP:P71786; identified by sequence similarity; putative.
 
    0.571
galE
UDP-glucose 4-epimerase; Identified by match to TIGR protein family HMM TIGR01777; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.566
AAO54601.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Similar to GP:7329199; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:7329199, identified by sequence similarity, putative; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.561
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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