Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AAO56927.1Transporter, LysE family; Similar to GP:15075130; identified by sequence similarity; putative. (202 aa)    
Predicted Functional Partners:
rhtC
Threonine efflux protein; Similar to GP:6960243, and SP:P27846; identified by sequence similarity; putative.
  
   
 0.578
AAO55549.1
Benzoate transport C-terminal domain protein.
  
    0.557
AAO56928.1
Lipoprotein, putative.
       0.500
AAO55403.1
Efflux protein, LysE family; Identified by match to TIGR protein family HMM TIGR00949.
  
     0.481
AAO54676.1
Transporter, LysE family; See PMID:20190049 for expression data; similar to GP:15157837; identified by sequence similarity; putative.
  
   
 0.463
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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