Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AAO56976.1Transcriptional regulator, RpiR family; See PMID:20190049 for expression data; similar to GP:15158705; identified by sequence similarity; putative. (302 aa)    
Predicted Functional Partners:
AAO56975.1
iolC protein; This gene assignment is based partly on its location in a gene cluster; similar to SP:P42414; identified by sequence similarity; putative.
 
   
 0.901
AAO56974.1
iolE protein; Similar to SP:P42416, GB:X66079, SP:Q01892, and PID:36563; identified by sequence similarity; putative.
 
     0.841
AAO56973.1
iolB protein; Similar to SP:P42413; identified by sequence similarity; putative.
 
   
 0.835
AAO56970.1
iolD protein; Similar to SP:P42415; identified by sequence similarity; putative; Belongs to the TPP enzyme family.
 
   
 0.706
iolI
iolI protein; This gene assignment is based partly on its location in a gene cluster; similar to GP:15158659, and SP:P42419; identified by sequence similarity; putative.
 
     0.585
iolG
Myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
     0.560
AAO56508.1
Conserved hypothetical protein; Similar to GP:7649627; identified by sequence similarity; putative.
 
     0.541
AAO58543.1
Transcriptional regulator, RpiR family; Identified by match to PFAM protein family HMM PF01380.
  
   
 0.462
hexR
Hex regulon repressor; See PMID:20190049 for expression data.
  
   
 0.456
AAO56223.1
Oxidoreductase, Gfo/Idh/MocA family; Similar to GP:15158710; identified by sequence similarity; putative.
 
     0.449
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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