Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO57016.1C4-dicarboxylate transporter/malic acid transport protein; Similar to SP:P50537; identified by sequence similarity; putative. (386 aa)    
Predicted Functional Partners:
AAO57017.1
Conserved hypothetical protein; Similar to GP:10443290; identified by sequence similarity; putative.
       0.581
AAO57015.1
Transcriptional regulator, LysR family; Similar to GP:15021663; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.542
AAO58051.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.471
AAO55050.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.427
AAO57018.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
       0.414
phcA
PhcA; See PMID: 18363647; similar to GP:14029167, and GP:14029167; identified by sequence similarity; putative.
  
     0.409
AAO58181.1
UvrD/REP helicase family protein; See PMID:20190049 for expression data; similar to SP:P56255; identified by sequence similarity; putative.
  
     0.409
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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