Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tvrRTetR-like virulence regulator; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00440; mutations exhibit reduced disease symptoms and growth in planta; PMID16267304. (207 aa)    
Predicted Functional Partners:
AAO57049.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.481
AAO57051.1
Methyl-accepting chemotaxis protein; Identified by match to PFAM protein family HMM PF00672; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00672.
   
   0.479
hrpL
RNA polymerase sigma factor HrpL; See PMID:20190049 for expression data; similar to GP:5360281, and SP:P37929; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.473
cmaA
Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222.
     
 0.424
AAO56964.1
Sugar ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
      
 0.406
AAO58837.1
Rhs element Vgr protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01646.
      
 0.405
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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