Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AAO57467.1Repressor protein cI; See PMID:20190049 for expression data; similar to GP:8919960, and SP:P03034; identified by sequence similarity; putative. (234 aa)    
Predicted Functional Partners:
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.719
cro
Regulatory protein Cro; Similar to SP:P03040; identified by sequence similarity; putative.
       0.545
AAO57465.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.523
AAO53710.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15978663; identified by sequence similarity; putative.
  
     0.522
AAO53705.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.515
AAO53715.1
Conserved hypothetical protein; Similar to GP:4324614; identified by sequence similarity; putative.
  
     0.432
AAO57463.1
Tail fiber protein H, putative; Similar to GP:13752220; identified by sequence similarity; putative.
       0.418
AAO57464.1
Conserved hypothetical protein; Similar to GP:13752219, and GP:13752219; identified by sequence similarity; putative.
       0.418
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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