Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO57493.1Conserved hypothetical protein; Similar to SP:O64363, and SP:P76158; identified by sequence similarity; putative. (159 aa)    
Predicted Functional Partners:
AAO57494.1
Lysozyme, putative; Identified by match to PFAM protein family HMM PF00182.
       0.695
AAO57495.1
Tail fiber domain protein.
       0.505
AAO57498.1
Host specificity protein J, internal deletion; Identified by match to PFAM protein family HMM PF03280.
       0.463
AAO57500.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.457
AAO57501.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.457
AAO57496.1
Conserved domain protein; Similar to GP:9946518; identified by sequence similarity; putative.
       0.456
AAO57497.1
Conserved domain protein; Similar to GP:9309366; identified by sequence similarity; putative.
       0.456
AAO57499.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.456
AAO57503.1
Tail tape measure protein; Similar to GP:17484037; identified by sequence similarity; putative.
       0.413
AAO57502.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
       0.412
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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