Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Experiments
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[Homology]
Score
AAO57598.1Conserved hypothetical protein; Identified by match to TIGR protein family HMM TIGR00024. (218 aa)    
Predicted Functional Partners:
AAO57597.1
Helicase domain protein; Similar to GP:14025425; identified by sequence similarity; putative.
 
    0.974
AAO57590.1
Conserved hypothetical protein; Similar to GP:15155824; identified by sequence similarity; putative.
 
     0.907
AAO57591.1
DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.
 
     0.907
sbcC
Exonuclease SbcC; See PMID:20190049 for expression data; similar to SP:P13458; identified by sequence similarity; putative.
      
 0.625
AAO56128.1
Conserved hypothetical protein; Similar to GP:5918205, and GP:5918205; identified by sequence similarity; putative.
 
   
 0.608
AAO56939.1
DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.
 
     0.514
AAO57593.1
Amino acid ABC transporter, permease protein.
       0.423
AAO57594.1
Amino acid ABC transporter, permease protein.
       0.414
AAO57595.1
Conserved hypothetical protein; Similar to GP:15073237; identified by sequence similarity; putative.
       0.410
AAO56468.1
DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.
  
     0.409
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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