Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
hopE1Type III effector HopE1; Previously known as HolPtoV (PMID11872842; Guttman et al, 2002) and HopPtoE (PMID12032338; Petnicki-Ocwieja et al, 2002); see PMID:20190049 for expression data. (211 aa)    
Predicted Functional Partners:
hopG1
Type III effector HopG1; Previously known as HolPtoW (PMID11872842; Guttman et al, 2002) and HopPtoG (PMID12032338; Petnicki-Ocwieja et al, 2002); see PMID:20190049 for expression data.
      
 0.635
hopAB2
Type III effector HopAB2; Effector protein involved in gene-for-gene resistance in tomato plants. It is recognized by the host Pto resistance protein and elicits Pto and Prf-dependent hypersensitive response (HR) and programmed cell death (PCD), resulting in host immunity. In susceptible plants, acts as a virulence factor by suppressing PCD and HR-based plant immunity. This function requires its E3 ubiquitin ligase activity probably by recruiting E2 enzymes and transferring ubiquitin molecules to cellular proteins involved in regulation of PCD and targeting them for degradation. Also, [...]
      
 0.620
AAO57781.1
Conserved domain protein.
       0.532
hopAM1-1
Type III effector HopAM1-1; Also known as avirulence protein AvrPpiB1; similar to GP:886702, and GP:886702; identified by sequence similarity; putative.
      
 0.521
hopM1
Type III effector HopM1; Involved in the suppression of basal resistance and promotion of disease symptoms in plants. Mediates the ubiquitination and degradation, via the host proteasome, of a low-abundance immunity- associated protein in Arabidopsis thaliana. May be involved in the inhibition of a host vesicle trafficking pathway.
      
 0.480
hopAA1-1
Type III effector HopAA1-1; Previously known as HopPtoA1 (PMID12437299; Badel et al,2002) and CEL ORF5 (PMID10781092; Alfano et al, 2000); see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02987.
      
 0.433
hopN1
Type III effector HopN1; Also known as CEL ORF7 (PMID10781092; Alfano et al, 2000) and HolPtoT (PMID11872842; Guttman et al, 2002), and HopPtoN (PMID15469508; Lopez-Solanilla, et al, 2004); identified by match to TIGR protein family HMM TIGR01586.
      
 0.431
hopF2
Type III effector HopF2; This gene has an isoleucine start. Previously known as HolPtoAD (PMID11872842; Guttman et al, 2002) and HopPtoF (PMID11854524; Fouts et al, 2002); see PMID:20190049 for expression data; similar to GP:7677395; identified by sequence similarity; putative.
      
 0.426
hopY1
Type III effector HopY1; Previously known as HolPtoY (PMID11872842; Guttman et al, 2002) and ORF11 (PMID11854524; Fouts et al, 2002); similar to GP:19071534; identified by sequence similarity; putative; see PMID:20190049 for expression data; Previously known as HolPtoY; PMID1187284, Guttman et al, 2002; and ORF11; PMID11854524, Fouts et al, 2002; ., see PMID:20190049 for expression data; similar to GP:19071534, identified by sequence similarity, putative.
      
 0.418
hopD1
Type III effector HopD1; Effector protein involved in non-host recognition.
      
 0.418
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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