Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO57795.1Conserved domain protein. (71 aa)    
Predicted Functional Partners:
hcp-1
Secreted protein Hcp.
     
 0.906
hcp-2
Secreted protein Hcp; See PMID:20190049 for expression data.
     
 0.906
AAO56049.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.752
AAO58854.1
Conserved protein of unknown function; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.
 
 
 0.750
AAO56048.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.593
AAO58855.1
Conserved protein of unknown function; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.
 
 
 0.574
AAO58841.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
 
  
 0.572
AAO54023.1
Conserved domain protein; Similar to GP:17427973; identified by sequence similarity; putative.
 
     0.539
AAO56052.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.500
AAO56059.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.500
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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