STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO57816.1Iron-regulated protein A, putative; See PMID:20190049 for expression data. (452 aa)    
Predicted Functional Partners:
AAO57817.1
Lipoprotein, putative; See PMID:20190049 for expression data.
 
    0.971
AAO57818.1
Lipoprotein, putative; See PMID:20190049 for expression data.
 
    0.953
AAO57819.1
Lipoprotein, putative; See PMID:20190049 for expression data.
 
    0.922
AAO53859.1
Iron ABC transporter, periplasmic iron-binding protein; See PMID:20190049 for expression data.
  
    0.793
AAO57815.1
GGDEF domain/EAL domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00672.
       0.733
AAO57615.1
Bacterioferritin-associated ferredoxin; See PMID:20190049 for expression data; similar to GP:4378826, and SP:P13655; identified by sequence similarity; putative.
  
    0.638
cumA
Multicopper oxidase; See PMID:20190049 for expression data.
 
     0.508
AAO53860.1
Iron ABC transporter, permease protein.
 
    0.423
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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