Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO57825.1PAP2 superfamily protein; Identified by match to PFAM protein family HMM PF01569. (247 aa)    
Predicted Functional Partners:
AAO58717.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
  
   
 0.779
colS
Sensor histidine kinase ColS; See PMID:20190049 for expression data.
 
   
 0.719
colR
DNA-binding response regulator ColR; See PMID:20190049 for expression data.
 
   
 0.714
AAO57822.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:1729785; identified by sequence similarity; putative.
 
   
 0.652
AAO58387.1
Lipoprotein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03886.
  
     0.632
AAO58417.1
Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF02585.
  
     0.607
inaA
inaA protein; See PMID:20190049 for expression data; similar to SP:P27294; identified by sequence similarity; putative.
 
   
 0.578
dgkA
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
 
   
 0.539
AAO58046.1
Lipoprotein, putative; See PMID:20190049 for expression data.
       0.533
AAO58993.1
Conserved hypothetical protein; Similar to GP:1729785, GB:D21144, PID:415277, PID:882432, SP:P52037, PID:2160242, and PID:2367175; identified by sequence similarity; putative.
 
   
 0.518
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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