Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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lptAostA family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. (182 aa)    
Predicted Functional Partners:
lptC
Conserved protein of unknown function; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
 
 
 0.998
AAO57901.1
ABC transporter, ATP-binding protein; Identified by match to TIGR protein family HMM TIGR01186; see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01186.
  
  
 0.995
lptD
Organic solvent tolerance protein, putative; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.959
AAO57898.1
Phosphatase, YrbI family; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.924
AAO57897.1
Sugar isomerase, KpsF/GutQ; See PMID:20190049 for expression data; similar to GP:9950693; identified by sequence similarity; putative.
  
  
 0.900
AAO57893.1
Toluene tolerance protein, putative; Similar to GP:4336801, and GP:4336801; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:4336801, and GP:4336801, identified by sequence similarity, putative.
 
  
 0.889
AAO57891.1
Toluene tolerance protein, putative; See PMID:20190049 for expression data; similar to GP:4336803; identified by sequence similarity; putative; Belongs to the BolA/IbaG family.
 
  
 0.814
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.793
omlA
Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.792
AAO57896.1
Toluene tolerance ABC transporter, ATP-binding protein, putative; See PMID:20190049 for expression data; similar to GP:4336798; identified by sequence similarity; putative.
 
     0.757
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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