STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGCatalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (756 aa)    
Predicted Functional Partners:
katB
Catalase; Similar to SP:P46206, GB:M11958, GB:M11959, GB:M11960, GB:M11961, GB:M11962, GB:M11963, GB:M11964, GB:M11965, GB:M11966, GB:M11967, GB:M11968, GB:L00159, GB:L00160, GB:S75476, GB:V00572, GB:D28371, SP:P00558, SP:P07205, PID:35435, PID:387020, and PID:387021; identified by sequence similarity; putative; Belongs to the catalase family.
    
 0.985
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.980
hisC
Histidinol-phosphate aminotransferase; Identified by match to TIGR protein family HMM TIGR01265; see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01265; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.905
AAO56116.1
Acetyltransferase, GNAT family; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01575.
     
 0.903
aspC
Aspartate aminotransferase; See PMID:20190049 for expression data.
     
 0.901
tyrB
Aromatic-amino-acid aminotransferase; See PMID:20190049 for expression data; similar to GP:13364513, and SP:P04693; identified by sequence similarity; putative.
     
 0.901
phhA
Phenylalanine-4-hydroxylase; Identified by match to TIGR protein family HMM TIGR01270.
     
  0.900
aspB
Aspartate aminotransferase; Similar to SP:P53001; identified by sequence similarity; putative.
     
  0.900
sodC
Superoxide dismutase, Cu-Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
     
 0.862
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
      
 0.859
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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