Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO58022.1Glycine betaine/choline OpuC ABC transporter, permease protein; See PMID:17660277. (217 aa)    
Predicted Functional Partners:
opuCA
Glycine betaine/choline OpuC ABC transporter, ATP-binding protein; See PMID:17660277; see PMID:20190049 for expression data.
 
 0.999
AAO58023.1
Glycine betaine/choline OpuC ABC transporter, periplasmic substrate-binding protein; See PMID:17660277.
 
 0.999
AAO58024.1
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
  
 
0.987
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
     
 0.615
AAO58699.1
Histidine ABC transporter, ATP-binding protein, putative.
 
  
 0.551
AAO56549.1
Glycine betaine/L-proline ABC transporter, ATP-binding protein.
 
  
 0.490
AAO54006.1
glycine/betaine/L-proline ABC transporter, ATP-binding subunit.
 
  
 0.403
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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