Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
shcS2Type III chaperone ShcS2; See PMID:20190049 for expression data; identified by Glimmer. (157 aa)    
Predicted Functional Partners:
hopS2
Type III effector HopS2; Previously known as ORF15 (PMID12032338; Petnicki-Ocwieja et al 2002) and HolPtoZ2 (PMID12615215; Greenberg and Vinatzer, 2003); see PMID:20190049 for expression data.
     
 0.902
hopS1
Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.
      
 0.683
hopO1-2
Type III effector HopO1-2; Previously known as HopPtoO2 (PMID11872842; Guttman et al, 2002) and HopPtoS3 (PMID12032338; Petnicki-Ocwieja et al, 2002); identified by match to PFAM protein family HMM PF03496.
      
 0.491
hopT2
Type III effector HopT2; Previously known as HolPtoU3 and HolPtoU-related (PMID12615215; Greenberg and Vinatzer, 2003); similar to GP:19071526, and GP:19071526; identified by sequence similarity; putative.
       0.463
hopT1-2
Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.
     
 0.411
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.