hopS1 protein (Pseudomonas syringae tomato) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hopS1

Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion. (118 aa)

Predicted Functional Partners:

shcS1

0.951

shcS2

0.683

hopT1-2

0.628

AAO58046.1

0.485

AAO54441.1

0.407

hopO1-2

0.406

Your Current Organism:

Pseudomonas syringae tomato

NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAO54441.1	hopS1	PSPTO_0907	PSPTO_4597	Hypothetical protein; Identified by Glimmer2; putative.	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	0.407
AAO54441.1	hopT1-2	PSPTO_0907	PSPTO_4593	Hypothetical protein; Identified by Glimmer2; putative.	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	0.408
AAO58046.1	hopS1	PSPTO_4600	PSPTO_4597	Lipoprotein, putative; See PMID:20190049 for expression data.	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	0.485
AAO58046.1	shcS1	PSPTO_4600	PSPTO_4599	Lipoprotein, putative; See PMID:20190049 for expression data.	Type III chaperone ShcS1; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.	0.495
hopO1-2	hopS1	PSPTO_4594	PSPTO_4597	Type III effector HopO1-2; Previously known as HopPtoO2 (PMID11872842; Guttman et al, 2002) and HopPtoS3 (PMID12032338; Petnicki-Ocwieja et al, 2002); identified by match to PFAM protein family HMM PF03496.	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	0.406
hopO1-2	hopT1-2	PSPTO_4594	PSPTO_4593	Type III effector HopO1-2; Previously known as HopPtoO2 (PMID11872842; Guttman et al, 2002) and HopPtoS3 (PMID12032338; Petnicki-Ocwieja et al, 2002); identified by match to PFAM protein family HMM PF03496.	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	0.860
hopO1-2	shcS1	PSPTO_4594	PSPTO_4599	Type III effector HopO1-2; Previously known as HopPtoO2 (PMID11872842; Guttman et al, 2002) and HopPtoS3 (PMID12032338; Petnicki-Ocwieja et al, 2002); identified by match to PFAM protein family HMM PF03496.	Type III chaperone ShcS1; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.	0.623
hopO1-2	shcS2	PSPTO_4594	PSPTO_4589	Type III effector HopO1-2; Previously known as HopPtoO2 (PMID11872842; Guttman et al, 2002) and HopPtoS3 (PMID12032338; Petnicki-Ocwieja et al, 2002); identified by match to PFAM protein family HMM PF03496.	Type III chaperone ShcS2; See PMID:20190049 for expression data; identified by Glimmer.	0.491
hopS1	AAO54441.1	PSPTO_4597	PSPTO_0907	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	Hypothetical protein; Identified by Glimmer2; putative.	0.407
hopS1	AAO58046.1	PSPTO_4597	PSPTO_4600	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	Lipoprotein, putative; See PMID:20190049 for expression data.	0.485
hopS1	hopO1-2	PSPTO_4597	PSPTO_4594	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	Type III effector HopO1-2; Previously known as HopPtoO2 (PMID11872842; Guttman et al, 2002) and HopPtoS3 (PMID12032338; Petnicki-Ocwieja et al, 2002); identified by match to PFAM protein family HMM PF03496.	0.406
hopS1	hopT1-2	PSPTO_4597	PSPTO_4593	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	0.628
hopS1	shcS1	PSPTO_4597	PSPTO_4599	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	Type III chaperone ShcS1; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.	0.951
hopS1	shcS2	PSPTO_4597	PSPTO_4589	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	Type III chaperone ShcS2; See PMID:20190049 for expression data; identified by Glimmer.	0.683
hopT1-2	AAO54441.1	PSPTO_4593	PSPTO_0907	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.408
hopT1-2	hopO1-2	PSPTO_4593	PSPTO_4594	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	Type III effector HopO1-2; Previously known as HopPtoO2 (PMID11872842; Guttman et al, 2002) and HopPtoS3 (PMID12032338; Petnicki-Ocwieja et al, 2002); identified by match to PFAM protein family HMM PF03496.	0.860
hopT1-2	hopS1	PSPTO_4593	PSPTO_4597	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	Type III effector HopS1; Previously known as holPtoZ (PMID11872842; Guttman et al, 2002), HopPtoS4 (PMID14702323; Schechter, 2004) ORF26 (PMID12032338; Petnicki-Ocwieja et al, 2002); similar to GP:19071536; identified by sequence similarity; putative; possibly truncated by ISPssy insertion.	0.628
hopT1-2	shcS1	PSPTO_4593	PSPTO_4599	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	Type III chaperone ShcS1; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.	0.437
hopT1-2	shcS2	PSPTO_4593	PSPTO_4589	Type III effector HopT1-2; Previously known as HolPtoU2 (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071528; identified by sequence similarity; putative.	Type III chaperone ShcS2; See PMID:20190049 for expression data; identified by Glimmer.	0.411
shcS1	AAO58046.1	PSPTO_4599	PSPTO_4600	Type III chaperone ShcS1; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.	Lipoprotein, putative; See PMID:20190049 for expression data.	0.495

page 1 of 2

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Fusion

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About