Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AAO58103.1Zinc metallopeptidase, putative; See PMID:20190049 for expression data; similar to GP:15157320; identified by sequence similarity; putative. (296 aa)    
Predicted Functional Partners:
AAO58104.1
Conserved domain protein; See PMID:20190049 for expression data; similar to GP:17428415; identified by sequence similarity; putative.
       0.877
AAO58911.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04226.
  
  
 0.707
AAO54938.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
      
 0.636
AAO57450.1
Membrane protein, putative; See PMID:20190049 for expression data; similar to GP:15074112; identified by sequence similarity; putative.
      
 0.630
AAO58102.1
Membrane protein, putative; Similar to GP:15157867; identified by sequence similarity; putative.
 
     0.575
aat
leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
      
 0.564
xerC
Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
      
 0.492
lsyA-1
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
      
 0.491
lsyA-2
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
      
 0.491
AAO57141.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03458.
 
     0.424
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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