Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AAO55654.1 | AAO55666.1 | PSPTO_2137 | PSPTO_2149 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | 0.993 |
| AAO55654.1 | AAO57966.1 | PSPTO_2137 | PSPTO_4518 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | This gene is aparrently the initiating component of a non-ribosomal peptide synthetase (due to the presence of an initial non-amino acid adenylation/ligase domain) and is most likely associated with the following gene which appears to be a terminating component. This gene contains a thiolation domain as well as one complete amino acid activation, thiolation and condensation domain modules which appears to be specific for serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a pre [...] | 0.988 |
| AAO55654.1 | AAO57967.1 | PSPTO_2137 | PSPTO_4519 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.999 |
| AAO55654.1 | cfa6 | PSPTO_2137 | PSPTO_4686 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Coronafacic acid polyketide synthase I; This gene is the first of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPC (2-carboxy-2-cyclopentenone) from an acyl carrier protein (cfa1), it then adds a buyrate group and then completely reduces the ketone of the (former) carboxylate group. The resulting product is then passed to the second polyketide synthetase (cfa7); similar to GP:13346874; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the first of two multi [...] | 0.917 |
| AAO55654.1 | cfa7 | PSPTO_2137 | PSPTO_4687 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Coronafacic acid polyketide synthetase II; This gene is the second of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPE (2-[1-oxo-2-cyclopenten-2-ylmethyl]butanoic acid) from the first synthetase, Cpe6. It then adds one final acetate group, catalyzes the cyclization of the second ring and converts a ketone to a double bond. The product is released by a terminal thioesterase domain; similar to GP:13162634; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the [...] | 0.921 |
| AAO55654.1 | cmaA | PSPTO_2137 | PSPTO_4709 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.999 |
| AAO55654.1 | hopAD1 | PSPTO_2137 | PSPTO_4691 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Type III effector HopAD1; Previously known as HolPtoS (PMID11872842; Guttman et al, 2002) and HopPtoI (PMID12032338; Petnicki-Ocwieja et al, 2002); see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02918. | 0.521 |
| AAO55654.1 | mgoA | PSPTO_2137 | PSPTO_5457 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Ornithine acetyl transferase inhibitor; This enzyme consists of an amino acid activation and ligation domain followed by a thiolation domaintypical of non-ribosomal peptide synthetases; similar to the ornithine acetyl transferase inhibitor mangotoxin; see PMID:17506328. | 0.983 |
| AAO55654.1 | pvdE | PSPTO_2137 | PSPTO_2153 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Pyoverdine ABC transporter, ATP-binding/permease protein; See PMID:20190049 for expression data; similar to GP:466460, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; putative. | 0.851 |
| AAO55666.1 | AAO55654.1 | PSPTO_2149 | PSPTO_2137 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | 0.993 |
| AAO55666.1 | AAO57966.1 | PSPTO_2149 | PSPTO_4518 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | This gene is aparrently the initiating component of a non-ribosomal peptide synthetase (due to the presence of an initial non-amino acid adenylation/ligase domain) and is most likely associated with the following gene which appears to be a terminating component. This gene contains a thiolation domain as well as one complete amino acid activation, thiolation and condensation domain modules which appears to be specific for serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a pre [...] | 0.951 |
| AAO55666.1 | AAO57967.1 | PSPTO_2149 | PSPTO_4519 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.999 |
| AAO55666.1 | AAO57969.1 | PSPTO_2149 | PSPTO_4521 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:9937237, and GP:17431110; identified by sequence similarity; putative. | 0.993 |
| AAO55666.1 | cfa6 | PSPTO_2149 | PSPTO_4686 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | Coronafacic acid polyketide synthase I; This gene is the first of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPC (2-carboxy-2-cyclopentenone) from an acyl carrier protein (cfa1), it then adds a buyrate group and then completely reduces the ketone of the (former) carboxylate group. The resulting product is then passed to the second polyketide synthetase (cfa7); similar to GP:13346874; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the first of two multi [...] | 0.997 |
| AAO55666.1 | cfa7 | PSPTO_2149 | PSPTO_4687 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | Coronafacic acid polyketide synthetase II; This gene is the second of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPE (2-[1-oxo-2-cyclopenten-2-ylmethyl]butanoic acid) from the first synthetase, Cpe6. It then adds one final acetate group, catalyzes the cyclization of the second ring and converts a ketone to a double bond. The product is released by a terminal thioesterase domain; similar to GP:13162634; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the [...] | 0.995 |
| AAO55666.1 | cmaA | PSPTO_2149 | PSPTO_4709 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.999 |
| AAO55666.1 | hopAD1 | PSPTO_2149 | PSPTO_4691 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | Type III effector HopAD1; Previously known as HolPtoS (PMID11872842; Guttman et al, 2002) and HopPtoI (PMID12032338; Petnicki-Ocwieja et al, 2002); see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02918. | 0.449 |
| AAO55666.1 | mgoA | PSPTO_2149 | PSPTO_5457 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | Ornithine acetyl transferase inhibitor; This enzyme consists of an amino acid activation and ligation domain followed by a thiolation domaintypical of non-ribosomal peptide synthetases; similar to the ornithine acetyl transferase inhibitor mangotoxin; see PMID:17506328. | 0.983 |
| AAO55666.1 | pvdE | PSPTO_2149 | PSPTO_2153 | Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component; This synthetase is the fourth module (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore; see PMID:20190049 for expression data; similar to GP:13094061; identified by sequence similarity; putative. | Pyoverdine ABC transporter, ATP-binding/permease protein; See PMID:20190049 for expression data; similar to GP:466460, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; putative. | 0.910 |
| AAO57966.1 | AAO55654.1 | PSPTO_4518 | PSPTO_2137 | This gene is aparrently the initiating component of a non-ribosomal peptide synthetase (due to the presence of an initial non-amino acid adenylation/ligase domain) and is most likely associated with the following gene which appears to be a terminating component. This gene contains a thiolation domain as well as one complete amino acid activation, thiolation and condensation domain modules which appears to be specific for serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a pre [...] | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | 0.988 |
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