Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO58140.1ISPs1, transposase OrfB; This gene is missing the translational start site found in other IS element copies elsewhere in the genome, but it might be supplied by OrfA in a programmed frameshift; similar to GP:12484141; identified by sequence similarity; putative. (112 aa)    
Predicted Functional Partners:
AAO57780.1
ISPs1, transposase OrfA; See PMID:20190049 for expression data; similar to GP:5912506; identified by sequence similarity; putative.
 
     0.753
AAO53955.1
Membrane protein, putative; Similar to GP:13661672; identified by sequence similarity; putative.
  
     0.550
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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