Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hldELipopolysaccharide biosynthesis protein RfaE; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family. (474 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.998
AAO53740.1
Histidinol-phosphate phosphatase family protein; See PMID:20190049 for expression data; similar to GP:11120073; identified by sequence similarity; putative.
 
  
 0.992
waaC
Lipopolysaccharide heptosyltransferase; See PMID:20190049 for expression data; similar to SP:P24173; identified by sequence similarity; putative.
 
   
 0.951
rfaF
ADP-heptose--LPS heptosyltransferase II; See PMID:20190049 for expression data; similar to SP:P37692, GB:U14003, SP:P39352, PID:537120, GB:U00096, and PID:1790730; identified by sequence similarity; putative.
 
   
 0.948
msbA
Lipid A ABC transporter, ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
   
 0.818
AAO58414.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01770.
     
 0.705
waaG
Lipopolysaccharide core biosynthesis protein WaaG; See PMID:20190049 for expression data; similar to GB:X55137; identified by sequence similarity; putative.
 
   
 0.693
AAO58413.1
Toluene tolerance protein, putative.
     
 0.681
lpxB
Lipid A disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.658
AAO57897.1
Sugar isomerase, KpsF/GutQ; See PMID:20190049 for expression data; similar to GP:9950693; identified by sequence similarity; putative.
 
   
 0.648
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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