Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO58415.1Protein of unknown function; See PMID:20190049 for expression data. (245 aa)    
Predicted Functional Partners:
AAO58414.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01770.
     
 0.969
AAO58416.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
     
 0.863
AAO58419.1
Glycosyl transferase, group 1 family protein; See PMID:20190049 for expression data.
     
 0.843
AAO58420.1
Carbamoyltransferase family protein; See PMID:20190049 for expression data.
     
 0.822
AAO58418.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
     
 0.746
AAO58417.1
Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF02585.
       0.730
rfaF
ADP-heptose--LPS heptosyltransferase II; See PMID:20190049 for expression data; similar to SP:P37692, GB:U14003, SP:P39352, PID:537120, GB:U00096, and PID:1790730; identified by sequence similarity; putative.
     
 0.682
hldE
Lipopolysaccharide biosynthesis protein RfaE; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
     
 0.627
AAO58421.1
Hypothetical protein; This gene is disrupted by an IS element insertion, interruption-N; known as holPtoAC (PMID12615215; Greenberg and Vinatzer, 2003) or HopAC (PMID15828679; Lindeberg et al, 2005); not a type III effector.
     
 0.562
AAO54803.1
Sensory box protein/response regulator; See PMID:20190049 for expression data.
  
  
 0.475
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.