Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AAO58417.1Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF02585. (478 aa)    
Predicted Functional Partners:
AAO58419.1
Glycosyl transferase, group 1 family protein; See PMID:20190049 for expression data.
 
  
 0.911
AAO58418.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
  
 0.908
AAO58420.1
Carbamoyltransferase family protein; See PMID:20190049 for expression data.
 
   
 0.899
AAO58416.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
  
 0.844
AAO57353.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.766
AAO58427.1
Lipopolysaccharide core biosynthesis protein, putative; See PMID:20190049 for expression data; similar to GP:3482880; identified by sequence similarity; putative.
 
     0.765
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
    0.759
AAO58387.1
Lipoprotein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03886.
  
     0.756
AAO58744.1
Outer membrane porin, OprD family; Identified by match to PFAM protein family HMM PF03573; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03573.
  
     0.753
algG
Alginate biosynthesis protein AlgG; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate. In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE (By similarity).
 
     0.749
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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