Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
rpmE-2Ribosomal protein L31; Binds the 23S rRNA. (75 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28; Identified by match to TIGR protein family HMM TIGR00009; see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.992
rpmG
Ribosomal protein L33; Identified by match to PFAM protein family HMM PF00471; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.992
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
 
 
 0.985
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
 
 
 0.983
rpsP
Ribosomal protein S16; See PMID:20190049 for expression data; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.982
rpmJ
Ribosomal protein L36; See PMID:20190049 for expression data; similar to SP:P21194; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.981
rpmF
Ribosomal protein L32; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01783; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.979
rpsI
Ribosomal protein S9; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.979
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.978
rpmA
Ribosomal protein L27; See PMID:20190049 for expression data; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.978
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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