Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAO58658.1Pyocin/colicin protein, putative; Similar to SP:Q06584; identified by sequence similarity; putative. (655 aa)    
Predicted Functional Partners:
AAO58659.1
Colicin/pyocin immunity family protein; Similar to SP:Q03708, GB:X05409, GB:K03001, GB:M26760, GB:M54931, GB:Y00109, GB:M20444, GB:M20445, GB:M20446, GB:M20447, GB:M20448, GB:M20449, GB:M20450, GB:M20451, GB:M20452, GB:M20453, GB:M20454, GB:M20455, GB:M20456, SP:P05091, PID:178390, PID:178396, and PID:178398; identified by sequence similarity; putative.
  
 
 0.906
AAO55668.1
TonB-dependent siderophore receptor, putative; Similar to SP:P25184, GB:M29874, GB:M29873, SP:P20813, and PID:181294; identified by sequence similarity; putative.
    
   0.691
AAO55669.1
TonB-dependent siderophore receptor, putative; Similar to SP:P42512, GB:L17325, and PID:306323; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P42512, GB:L17325, and PID:306323, identified by sequence similarity, putative.
    
   0.691
AAO57161.1
TonB-dependent siderophore receptor; See PMID:20190049 for expression data; similar to SP:P25184; identified by sequence similarity; putative.
    
   0.691
AAO58660.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.620
AAO58657.1
Oxidoreductase, zinc-binding protein.
       0.527
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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