STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspAAspartate ammonia-lyase; Identified by match to TIGR protein family HMM TIGR00838; see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00838. (474 aa)    
Predicted Functional Partners:
ansA
See PMID:20190049 for expression data; similar to SP:P18840; identified by sequence similarity; putative.
  
 
 0.977
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
   
 0.920
argH
Argininosuccinate lyase; See PMID:20190049 for expression data.
     
0.911
pckA
Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
  
 
 0.911
purB
Adenylosuccinate lyase; See PMID:20190049 for expression data; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.907
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.907
aspB
Aspartate aminotransferase; Similar to SP:P53001; identified by sequence similarity; putative.
    
 0.906
asnB
Asparagine synthetase, glutamine-hydrolyzing.
     
 0.903
pyrB
Aspartate carbamoyltransferase; See PMID:20190049 for expression data; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
  0.900
gltA
Citrate synthase I; Similar to PIR:A33596; identified by sequence similarity; putative; Belongs to the citrate synthase family.
     
 0.833
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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